Package: bulkdeconv 0.1.0

bulkdeconv: Cell-Type Deconvolution of Tumor Bulk RNA-Seq Through One Function

Runs published cell-type deconvolution and cell-abundance methods for bulk RNA-seq of tumor tissue (human or mouse) through a single function, bulkdeconv(data, expr, species, method). Each method runs in a separate R process from its own isolated library at a pinned version, so methods with conflicting dependencies can coexist. Input is checked before anything runs, a registry records what each method needs and how its output can be compared, and results come back in one standard layout with metadata and quality information. Only methods that need no registration are included. Fifteen methods are implemented in the package itself.

Authors:Daiki Kumakura [aut, cre]